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National Repository of Grey Literature 3 records found  Search took 0.01 seconds. 
Comparison and Transformations of Pathway Databases
 Němeček, Pavel ; Šilhavá, Jana (referee) ; Smrž, Pavel (advisor)
The main topic of this work are comparison and transformations of pathway databases. Large part is dedicated to databases KEGG and BioCarta. In work are described formats of provided data. In process of searching for overlapping pathways between databases are used clustering, edit distance, NCBI gene numbers and equivalent relationships comparison. The system was written in C++ and using XML parser. Results are text outputs, eventually files in DOT language, which can be executed with GraphViz to generate graphs.
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Signaling Pathway For Butanol Production In Clostridium Beijerinckii Nrrl B-598
 Musilová, Jana
In this study, we bring the first dynamic model of signaling pathway for butanol production in sporulating, solvent-producing bacterium, Clostridium beijerinckii NRRL B-598. The model allows to study functions of individual genes involved in the production of solvents and acids. We used an open platform Cell Collective for designing the model and stored it under the name ‘Signaling Pathway for Butanol Production in Clostridium beijerinckii NRRL B-598’ version 1.0 (https://research.cellcollective.org/?dashboard=true#36604:1/signaling-pathway-for-butanol-production-inclostridium-beijerinckii-nrrl-b598/10) in publicly available repository of Cell Collective.
Detailed record
Comparison and Transformations of Pathway Databases
 Němeček, Pavel ; Šilhavá, Jana (referee) ; Smrž, Pavel (advisor)
The main topic of this work are comparison and transformations of pathway databases. Large part is dedicated to databases KEGG and BioCarta. In work are described formats of provided data. In process of searching for overlapping pathways between databases are used clustering, edit distance, NCBI gene numbers and equivalent relationships comparison. The system was written in C++ and using XML parser. Results are text outputs, eventually files in DOT language, which can be executed with GraphViz to generate graphs.
Detailed record

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